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Benchmark seed match predictions

benchmark_preds.Rd

Benchmark seed match predictions

Usage

benchmark_preds(res, preds_col = "mer7m8", padj = 0.15, l2fc = 0)

Arguments

res

A data.frame of DESeq2 results.

preds_col

Column name containing seed match counts.

padj

Adjusted p-value cutoff for gold standard.

l2fc

Log2(fold change) cutoff for gold standard.

Value

Two figures:

  • A precision recall curve

  • A receiver operator curve

Examples

if (FALSE) { # interactive()
benchmark_preds(res)
}