This function checks for sequences with bulges and filters them based on the presence of 'N' in the first nt positions.
Usage
check_bulges_nt(sequenceStringSet, nt = nt, return_allowed = TRUE)
Arguments
- sequenceStringSet
An RNAStringSet object containing the sequences to be checked.
- nt
An integer representing the length from the start of the sequence where bulges are not allowed.
- return_allowed
A boolean indicating whether to return the allowed sequences (TRUE) or the removed sequences (FALSE).
Value
An RNAStringSet object containing either the allowed or removed sequences based on the return_allowed parameter.
Examples
if (FALSE) { # interactive()
}