Use ggplot2 to plot the ecdf for log2 fold changes — .plot_ecdf • SeedMatchR

Use ggplot2 to plot the ecdf for log2 fold changes

Usage

.plot_ecdf(
  res,
  palette = SeedMatchR.palette,
  title,
  legend_labels,
  test_results,
  theme = SeedMatchR.theme,
  x_lims = c(-1, 1),
  output_filename = NULL,
  height = 5,
  width = 5,
  dpi = 300
)

Arguments

res: DE results data.frame.
palette: Palette to use for line colors.
title: Plot tile.
legend_labels: Labels for legend entries.
test_results: Results from the ecdf_stat_test function.
theme: The ggplot2 theme parameters.
x_lims: The x-axis limits for plotting.
output_filename: Optional output filename.
height: Height of output image in inches.
width: Width of output image in inches.
dpi: DPI of output image.

Value

A ggplot of the log2(fold changes) ECDF.

Examples

if (FALSE) { # interactive()
}