get_network_matches — get_network

This function calculates network matches for a given graph and gene list using a transcription network and an aggregation method.

Usage

get_network_matches(
  ENSG_Genelist,
  organism,
  aggregator = "mean",
  network_data = NULL
)

ENSG_Genelist: A character vector of gene identifiers.
organism: A character string specifying the organism. Options are 'human' or 'mouse'. Default is 'human'.
aggregator: A character string specifying the aggregation method. Options are 'mean' or 'degree_importance'. Default is 'mean'.
network_data: A data frame containing the transcription network data. If NULL, the function will download the data from a predefined URL.The columns of the data frame should be 'source', 'target', 'edge_type', and 'evidence'.

A data frame with columns 'ENSG', 'repression_matches', and 'activation_matches' containing the vertex names and their respective feature values.